Meet the hominin species that gave us genital herpes

Cambridge University NewsFeed - Mon, 10/02/2017 - 00:06

Two herpes simplex viruses infect primates from unknown evolutionary depths. In modern humans these manifest as cold sores (HSV1) and genital herpes (HSV2).

Unlike HSV1, however, the earliest proto-humans did not take HSV2 with them when our ancient lineage split from chimpanzee precursors around 7 million years ago. Humanity dodged the genital herpes bullet – almost.

Somewhere between 3 and 1.4 million years ago, HSV2 jumped the species barrier from African apes back into human ancestors – probably through an intermediate hominin species unrelated to humans. Hominin is the zoological ‘tribe’ to which our species belongs. 

Now, a team of scientists from Cambridge and Oxford Brookes universities believe they may have identified the culprit: Parathropus boisei, a heavyset bipedal hominin with a smallish brain and dish-like face.

In a study published today in the journal Virus Evolution, they suggest that P.boisei most likely contracted HSV2 through scavenging ancestral chimp meat where savannah met forest – the infection seeping in via bites or open sores.

Hominins with HSV1 may have been initially protected from HSV2, which also occupied the mouth. That is until HSV2 “adapted to a different mucosal niche” say the scientists. A niche located in the genitals.

Close contact between P.boisei and our ancestor Homo erectus would have been fairly common around sources of water, such as Kenya’s Lake Turkana. This provided the opportunity for HSV2 to boomerang into our bloodline.

The appearance of Homo erectus around 2 million years ago was accompanied by evidence of hunting and butchery. Once again, consuming “infected material” would have transmitted the virus – only this time it was P.boisei being devoured.

“Herpes infect everything from humans to coral, with each species having its own specific set of viruses,” said senior author Dr Charlotte Houldcroft, a virologist from Cambridge’s Department of Archaeology. 

“For these viruses to jump species barriers they need a lucky genetic mutation combined with significant fluid exchange. In the case of early hominins, this means through consumption or intercourse – or possibly both.”

“By modelling the available data, from fossil records to viral genetics, we believe that Parathropus boisei was the species in the right place at the right time to both contract HSV2 from ancestral chimpanzees, and transmit it to our earliest ancestors, probably Homo erectus.”

When researchers from University of California, San Diego, published findings suggesting HSV2 had jumped between hominin species, Houldcroft became curious. 

While discussing genital herpes over dinner at Kings College, Cambridge, with fellow academic Dr Krishna Kumar, an idea formed. Kumar, an engineer who uses Bayesian network modelling to predict city-scale infrastructure requirements, suggested applying his techniques to the question of ancient HSV2.

Houldcroft and her collaborator Dr Simon Underdown, a human evolution researcher from Oxford Brookes, collated data ranging from fossil finds to herpes DNA and ancient African climates. Using Kumar’s model, the team generated HSV2 transmission probabilities for the mosaic of hominin species that roamed Africa during “deep time”.  

“Climate fluctuations over millennia caused forests and lakes to expand and contract,” said Underdown. “Layering climate data with fossil locations helped us determine the species most likely to come into contact with ancestral chimpanzees in the forests, as well as other hominins at water sources.”

Some promising leads turned out to be dead ends. Australopithecus afarensis had the highest probability of proximity to ancestral chimps, but geography also ruled it out of transmitting to human ancestors.

Ultimately, the researchers discovered the key player in all the scenarios with higher probabilities to be Parathropus boisei. A genetic fit virally who was found in the right places to be the herpes intermediary, with Homo erectus – and eventually us – the unfortunate recipients. 

“Once HSV2 gains entry to a species it stays, easily transferred from mother to baby, as well as through blood, saliva and sex,” said Houldcroft.

“HSV2 is ideally suited to low density populations. The genital herpes virus would have crept across Africa the way it creeps down nerve endings in our sex organs – slowly but surely.”

The team believe their methodology can be used to unravel the transmission mysteries of other ancient diseases – such as human pubic lice, also introduced via an intermediate hominin from ancestral gorillas over 3 million years ago.    

New research uses innovative data modelling to predict which species acted as an intermediary between our ancestors and those of chimpanzees to carry HSV2 – the genital herpes virus – across the species barrier.

Herpes infect everything from humans to coral, with each species having its own specific set of virusesCharlotte HouldcroftLeft: a cast of a P.boisei skull used for teaching at Cambridge University. Right: a figure from the data analysis in the study.

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Categories: Cambridge, Cambridgeshire

Into the woods with Shakespeare

Cambridge University NewsFeed - Mon, 10/02/2017 - 00:00

Fear and forests, writes Shakespeare scholar Professor Anne Barton, go hand in hand. Forests are where we get lost and meet wild men, where chaos rules and anything can happen. Shakespeare uses forest settings, sometimes magical, sometimes menacing, in many of his plays. In As You Like It, the Forest of Arden is a place of freedom, transformation and love – but also hardship for the shepherds who work there. When in Macbeth Birnam Wood does come to Dunsinane, Macbeth knows he is doomed.

Barton, who died in 2013, was Professor of English and a Fellow of Trinity College, Cambridge. Her many published works included Essays, Mainly Shakespearean (1994) and Ben Jonson, Dramatist (1984), and she was also an influential editor of Shakespeare’s plays. She was vitally interested in performance and staging, and her work has substantially altered and enriched the ways in which Shakespeare and other early modern dramatists have been understood and performed.

Now Cambridge University Press has published The Shakespearean Forest, Anne Barton’s final book, based in part on her Clark Lectures in 2003. It has been prepared for publication by Dr Hester Lees-Jeffries, a former research assistant to Barton and now a Shakespeare scholar herself, and a University Lecturer in the Faculty of English. In an editor’s note, Lees-Jeffries describes Barton’s seminars, held in her beautiful rooms at Trinity College, as often intimidating but always with a sense of occasion.

Woods and forests in the English language

The six chapters of The Shakespearean Forest set the playwright’s work within a historical, social and literary world of forests, as well as exploring the surviving evidence for the ways in which forests might have been staged in the early modern theatre. The opening chapter reminds us how big a part woodland plays in the story of the British Isles. The English language is rich with references to wood and woods. We talk about ‘not being able to see the wood for the trees’ and ‘not being out of the woods yet’. We ‘touch wood’ to forestall ill fortune.

If Britain is wooded today, it was much more so in Shakespeare’s lifetime. The names of these forests and woods entered the lexicon. The maiden name of Shakespeare’s mother Anne was Arden. His birthplace, the town of Stratford-upon-Avon, was once surrounded by the ancient woodland of the Forest of Arden. It was even said that a squirrel could jump from tree to tree right across the county of Warwickshire.

But this forest was already in decline in Shakespeare’s time. Trees provided timber for house and ship building, fuel for cooking and heating. In his Description of England in 1587, William Harrison commented that both England and Wales “have sometimes been very well replenished with great woods and groves, although at this time the said commodity be not a little decayed in both”.  

Shakespeare wrote for the ‘wooden O’, as the open-air, timber-framed Globe Theatre is described in the Prologue to Henry V. The origin of many of our current environmental anxieties can be found in the early modern period, and in the writings of Shakespeare and his contemporaries; they too were concerned by deforestation and pollution. Like the theatre itself, the forest is a place of transformation, growth and change.

Hunters, poachers and wild men of the woods

Forests were all about hunting – a pastime seen as preparation for warfare. Complex laws gave royalty rights and privileges to hunt deer and boar. Elizabeth I was a keen hunter, as well as being readily associated by poets in her courtly cult with Diana, virgin goddess of the hunt. Her successor James’ passion for the chase, writes Barton, “verged on the pathological”. He even insisted on being lowered into the gaping bellies of dead stags in the belief that the blood would strengthen his ankles.

Poaching was widespread and, though illegal, was not regarded as socially disreputable. The gentry, and even nobility, engaged in poaching – either for fun or to pursue family vendettas. Popular tradition holds that Shakespeare, too, may have been a poacher in his youth. Barton paints a vivid portrait of a group of poachers as a motley crew of unruly thrill-seekers united by blood-thirsty machismo.

“Heavily armed […] accompanied by a remarkably democratic mixture of friends, eager household servants, and people from the local village (sometimes including the vicar), men who had deer parks of their own, regularly broke into those of their neighbours, viciously assaulting keepers and killing more game than they could carry away.”

More benignly, green men and woodwoses (wild men of the woods) are key characters in the dramatis personae encountered in fields, woods and forests. In medieval churches and cathedrals, leaf masks are carved into stonework as decorative motifs, stubborn leftovers from a pagan past. They are, observes Barton, “reminders that forests are places of transformation, where the boundary between human life and that of animals, plants or trees are likely to become confused, or even obliterated”.

While for other dramatists, wild men were “a vogue that peaked and faded”, writes Barton, “Shakespeare’s interest in wild men seems to have extended throughout his writing career, taking in Oliver [As You Like It], Timon [Timon of Athens], the dancers in Bohemia [The Winter’s Tale], Caliban [The Tempest], Cardenio [The History of Cardenio] and (in a sense) Herne the Hunter in The Merry Wives of Windsor.” Elsewhere in the book she explores the various traditions of Robin Hood and Merlin the enchanter, both of whom make appearances in plays by Shakespeare’s contemporaries, including Ben Jonson.

How did Shakespeare bring the forest to his audiences?

A central question of Barton’s work is how Shakespeare might have brought the physicality of forest and woodland to the stage. There is no documentary evidence to show how early performances of Shakespeare’s plays led audiences deep into the woods. The only clue comes from the Netherlands in form of an engraving, dated 1635, which shows an elaborate indoor stage at a fair. In the background two tall trees are visible, perhaps waiting their moment in the next scene.

To exemplify the effort and expense invested in creating spectacular entertainment, Barton describes in detail the extraordinary artificial forest commissioned by Henry VIII for a pageant performed to celebrate the birth of a son on New Year’s Day 1511. ‘La Forrest Salvigne’ took the form of a rolling stage (requiring 40 men to propel it) complete with a magnificent forest from which the king and three companions appeared, mounted on horseback and fully armed.

According to meticulous accounts kept by an official, this forest comprised 12 hawthorns, 12 oaks, 12 hazels, 10 maples. 10 birches, 16 dozen fern roots and branches, 60 broom stalks and 16 furze bushes. Also present were 6 fir trees, holly, ivy, fennel stalks and 2,400 acorns and hazelnuts. Most of these items (including the nuts and acorns) were not gathered from the countryside but man-made. As Barton writes: “The individual shapes and sizes of its myriad leaves, for instance, were delicately cut from fine sarsnet, a fine silk material, and then backed with stiffened paper.”

Barton’s interest in the staging of Shakespeare’s plays reflects the way her own life brought together the worlds of theatre and academia, not least in her marriage to the director John Barton. In an afterword to The Shakespearean Forest, Shakespeare scholar Professor Peter Holland writes that many of Barton’s students became actors and directors and that many of her research students (including Holland himself) wrote dissertations centrally concerned with the questions of performance in early modern drama.

Holland writes: “Performance inflected her approach to plays and nothing in her writing […] allowed plays to be analysed as if their narratives could be divorced from the rhythms of performance.”

The Shakespearean Forest by Anne Barton is published by Cambridge University Press.

Inset image: map of Warwickshire from 'The theatre of the empire of Great Britaine' (1611) (Atlas 2.61.1, Cambridge University Library)


The Shakespearean Forest reimagines the real forests that our greatest playwright evoked in his works. The final book of renowned scholar, Anne Barton, it explores the changeable and sometimes sinister presence of the forest in literature and culture.

Forests are places of transformation, where the boundary between human life and that of animals, plants or trees are likely to become confused, or even obliterated.Anne BartonGlasgow University ArchiveHenry Peacham, 'Silvius', from Minerva Britanna (1612)

The text in this work is licensed under a Creative Commons Attribution 4.0 International License. For image use please see separate credits above.

Categories: Cambridge, Cambridgeshire